The Scot arrived at the County Ground at the start of March and guided the side to the semi-finals of the League One playoffs.
He is now expected to step down from his role by the end of the weekend, according to Sky Sports News.
Swindon are yet to make a comment on MacDonald's future.
Restore Data
| Team | P | W | D | L | F | A | GD | PTS | |
| 1 | Walsall | 39 | 20 | 11 | 8 | 68 | 44 | 24 | 71 |
| 2 | Bradford CityBradford | 39 | 20 | 10 | 9 | 52 | 32 | 20 | 70 |
| 3 | Port Vale | 39 | 18 | 13 | 8 | 49 | 38 | 11 | 67 |
| 4 | Doncaster RoversDoncaster | 38 | 19 | 9 | 10 | 57 | 44 | 13 | 66 |
| 5 | AFC Wimbledon | 39 | 18 | 11 | 10 | 52 | 29 | 23 | 65 |
| 6 | Notts County | 39 | 18 | 11 | 10 | 58 | 39 | 19 | 65 |
| 7 | Grimsby Town | 39 | 19 | 5 | 15 | 54 | 55 | -1 | 62 |
| 8 | Colchester UnitedColchester | 39 | 14 | 16 | 9 | 47 | 39 | 8 | 58 |
| 9 | Crewe AlexandraCrewe | 39 | 14 | 16 | 9 | 45 | 39 | 6 | 58 |
| 10 | Salford City | 38 | 15 | 11 | 12 | 47 | 43 | 4 | 56 |
| 11 | Chesterfield | 38 | 15 | 10 | 13 | 59 | 44 | 15 | 55 |
| 12 | Fleetwood TownFleetwood | 39 | 13 | 14 | 12 | 53 | 48 | 5 | 53 |
| 13 | Bromley | 39 | 13 | 13 | 13 | 51 | 50 | 1 | 52 |
| 14 | Cheltenham TownCheltenham | 39 | 13 | 11 | 15 | 51 | 57 | -6 | 50 |
| 15 | Swindon TownSwindon | 39 | 11 | 15 | 13 | 55 | 56 | -1 | 48 |
| 16 | BarrowBarrow | 39 | 13 | 9 | 17 | 43 | 46 | -3 | 48 |
| 17 | MK Dons | 39 | 13 | 7 | 19 | 51 | 59 | -8 | 46 |
| 18 | Newport CountyNewport | 39 | 13 | 7 | 19 | 48 | 64 | -16 | 46 |
| 19 | Gillingham | 38 | 11 | 11 | 16 | 32 | 40 | -8 | 44 |
| 20 | Accrington StanleyAccrington | 39 | 10 | 12 | 17 | 45 | 55 | -10 | 42 |
| 21 | Harrogate TownHarrogate | 39 | 11 | 9 | 19 | 30 | 49 | -19 | 42 |
| 22 | Tranmere RoversTranmere | 39 | 9 | 13 | 17 | 30 | 55 | -25 | 40 |
| 23 | Morecambe | 39 | 9 | 6 | 24 | 34 | 57 | -23 | 33 |
| 24 | Carlisle UnitedCarlisle | 39 | 7 | 10 | 22 | 30 | 59 | -29 | 31 |
| > League Two Full Table | |||||||||
